utils.hpp File Reference

Utilites for sequence matching. More...

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Classes
class	kaori::CombinationHash< num_variable_ >
	Hash a combination of barcode indices. More...

Namespaces
namespace	kaori
	Namespace for the kaori barcode-matching library.

Typedefs
typedef std::size_t	kaori::SeqLength
typedef std::vector< constchar * >::size_type	kaori::BarcodeIndex
typedef unsigned long long	kaori::Count

Enumerations
enum class	kaori::DuplicateAction : char { FIRST , LAST , NONE , ERROR }
enum class	kaori::SearchStrand : char { FORWARD , REVERSE , BOTH }

Functions
bool	kaori::is_barcode_index_ok (BarcodeIndex index)

Variables
constexpr BarcodeIndex	kaori::STATUS_UNMATCHED = static_cast<BarcodeIndex>(-1)
constexpr BarcodeIndex	kaori::STATUS_AMBIGUOUS = static_cast<BarcodeIndex>(-2)

Detailed Description

Utilites for sequence matching.