File List

Here is a list of all documented files with brief descriptions:

[detail level 123]

▼ kaori
▼ handlers
CombinatorialBarcodesPairedEnd.hpp	Process paired-end combinatorial barcodes
CombinatorialBarcodesSingleEnd.hpp	Process single-end combinatorial barcodes
DualBarcodesPairedEnd.hpp	Process dual barcodes
DualBarcodesPairedEndWithDiagnostics.hpp	Process dual barcodes with extra diagnostics
DualBarcodesSingleEnd.hpp	Process single-end dual barcodes
DualBarcodesSingleEndWithDiagnostics.hpp	Process dual barcodes with extra diagnostics
RandomBarcodeSingleEnd.hpp	Process single-end random barcodes
SingleBarcodePairedEnd.hpp	Process paired-end single barcodes
SingleBarcodeSingleEnd.hpp	Process single-end single barcodes
BarcodePool.hpp	Defines the BarcodePool class
BarcodeSearch.hpp	Search for barcode sequences
FastqReader.hpp	Defines the FastqReader class
kaori.hpp	Umbrella includes for the kaori barcode-matching library
MismatchTrie.hpp	Defines trie-based classes for mismatch-tolerant sequence matching
process_data.hpp	Process single- or paired-end data
ScanTemplate.hpp	Defines the ScanTemplate class
SimpleSingleMatch.hpp	Defines the SimpleSingleMatch class
utils.hpp	Utilites for sequence matching