Pool of barcode sequences for a variable region.
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#include <BarcodePool.hpp>
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| std::vector< const char * > | pool |
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| size_t | length = 0 |
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Pool of barcode sequences for a variable region.
The BarcodePool class defines the pool of possible barcode sequences for a given variable region in the template sequence. All sequences in this set are assumed to have the same length.
◆ BarcodePool() [1/3]
| kaori::BarcodePool::BarcodePool |
( |
| ) |
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inline |
◆ BarcodePool() [2/3]
| kaori::BarcodePool::BarcodePool |
( |
std::vector< const char * > |
barcode_pool, |
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size_t |
barcode_length |
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) |
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inline |
- Parameters
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| barcode_pool | Vector of pointers to sequences of length l, containing the pool of possible barcode sequences. |
| barcode_length | Length of each sequence. |
◆ BarcodePool() [3/3]
| kaori::BarcodePool::BarcodePool |
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const std::vector< std::string > & |
barcode_pool | ) |
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inline |
- Parameters
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| barcode_pool | Vector of sequences of the same length, containing the pool of possible barcode sequences. |
It is assumed that the lifetime of barcode_pool (and its strings) exceeds that of the constructed BarcodePool.
◆ operator[]()
| const char * kaori::BarcodePool::operator[] |
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size_t |
i | ) |
const |
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inline |
- Parameters
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| i | Index of the barcode sequence of interest. |
- Returns
- Pointer to the
i-th sequence in the pool.
◆ size()
| size_t kaori::BarcodePool::size |
( |
| ) |
const |
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inline |
- Returns
- Number of sequences in the pool.
◆ length
| size_t kaori::BarcodePool::length = 0 |
Length of each sequence in pool.
◆ pool
| std::vector<const char*> kaori::BarcodePool::pool |
Vector containing pointers to sequences of length len.
The documentation for this struct was generated from the following file:
