kaori::CombinatorialBarcodesSingleEnd< max_size_, num_variable_ >::Options Struct Reference

Optional parameters for CombinatorialBarcodeSingleEnd. More...

#include <CombinatorialBarcodesSingleEnd.hpp>

Public Attributes
int	max_mismatches = 0
bool	use_first = true
SearchStrand	strand = SearchStrand::FORWARD
DuplicateAction	duplicates = DuplicateAction::ERROR

Detailed Description

template<SeqLength max_size_, int num_variable_>
struct kaori::CombinatorialBarcodesSingleEnd< max_size_, num_variable_ >::Options

Optional parameters for CombinatorialBarcodeSingleEnd.

Member Data Documentation

duplicates

template<SeqLength max_size_, int num_variable_>

DuplicateAction kaori::CombinatorialBarcodesSingleEnd< max_size_, num_variable_ >::Options::duplicates = DuplicateAction::ERROR

How duplicated barcode sequences should be handled.

max_mismatches

template<SeqLength max_size_, int num_variable_>

int kaori::CombinatorialBarcodesSingleEnd< max_size_, num_variable_ >::Options::max_mismatches = 0

Maximum number of mismatches allowed across the vector sequence.

strand

template<SeqLength max_size_, int num_variable_>

SearchStrand kaori::CombinatorialBarcodesSingleEnd< max_size_, num_variable_ >::Options::strand = SearchStrand::FORWARD

Strand(s) of the read sequence to search for the vector sequence.

use_first

template<SeqLength max_size_, int num_variable_>

bool kaori::CombinatorialBarcodesSingleEnd< max_size_, num_variable_ >::Options::use_first = true

Parameters

Whether

to search only for the first match. If false, the handler will search for the best match (i.e., fewest mismatches) instead.

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The documentation for this struct was generated from the following file:

• kaori/handlers/CombinatorialBarcodesSingleEnd.hpp