kaori::ProcessPairedEndDataOptions Struct Reference

Options for process_paired_end_data(). More...

#include <process_data.hpp>

Public Attributes
int	num_threads = 1
std::size_t	buffer_size = 65535
std::size_t	block_size = 100000

Detailed Description

Options for process_paired_end_data().

Member Data Documentation

block_size

std::size_t kaori::ProcessPairedEndDataOptions::block_size = 100000

Number of reads to process in each thread. Smaller values improve work-sharing granularity but increase multi-threading overhead.

buffer_size

std::size_t kaori::ProcessPairedEndDataOptions::buffer_size = 65535

Size of the buffer for storing bytes from a FASTQ file prior to parsing. Larger values improve speed at the cost of increased memory usage.

num_threads

int kaori::ProcessPairedEndDataOptions::num_threads = 1

Number of threads to use for processing after FASTQ parsing.

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The documentation for this struct was generated from the following file:

• kaori/process_data.hpp