kaori::ScanTemplate< max_size >::State Struct Reference

Details on the current match to the read sequence. More...

#include <ScanTemplate.hpp>

Public Attributes
size_t	position = static_cast<size_t>(-1)
int	forward_mismatches = -1
int	reverse_mismatches = -1
bool	finished = false

Detailed Description

template<size_t max_size>
struct kaori::ScanTemplate< max_size >::State

Details on the current match to the read sequence.

Member Data Documentation

finished

template<size_t max_size>

bool kaori::ScanTemplate< max_size >::State::finished = false

Whether the match is at the end of the read sequence. If true, next() should not be called.

forward_mismatches

template<size_t max_size>

int kaori::ScanTemplate< max_size >::State::forward_mismatches = -1

Number of mismatches on the forward strand. This should only be used once next() is called.

position

template<size_t max_size>

size_t kaori::ScanTemplate< max_size >::State::position = static_cast<size_t>(-1)

Position of the match. This should only be used once next() is called.

reverse_mismatches

template<size_t max_size>

int kaori::ScanTemplate< max_size >::State::reverse_mismatches = -1

Number of mismatches on the reverse strand. This should only be used once next() is called.

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The documentation for this struct was generated from the following file:

• kaori/ScanTemplate.hpp