kaori::ScanTemplate< max_size_ >::State Struct Reference

Details on the current match to the read sequence. More...

#include <ScanTemplate.hpp>

Public Attributes
SeqLength	position = static_cast<SeqLength>(-1)
int	forward_mismatches = 0
int	reverse_mismatches = 0
bool	finished = false

Detailed Description

template<SeqLength max_size_>
struct kaori::ScanTemplate< max_size_ >::State

Details on the current match to the read sequence.

Member Data Documentation

finished

template<SeqLength max_size_>

bool kaori::ScanTemplate< max_size_ >::State::finished = false

Whether the match is at the end of the read sequence. If true, next() should not be called.

forward_mismatches

template<SeqLength max_size_>

int kaori::ScanTemplate< max_size_ >::State::forward_mismatches = 0

Number of mismatches on the forward strand at the current position. This should only be used after a call to next(), and only if the forward strand is searched.

position

template<SeqLength max_size_>

SeqLength kaori::ScanTemplate< max_size_ >::State::position = static_cast<SeqLength>(-1)

Position of the match to the template on the read sequence. This should only be used after a call to next().

reverse_mismatches

template<SeqLength max_size_>

int kaori::ScanTemplate< max_size_ >::State::reverse_mismatches = 0

Number of mismatches on the reverse strand at the current position. This should only be used after a call to next(), and only if the reverse strand is searched.

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The documentation for this struct was generated from the following file:

• kaori/ScanTemplate.hpp