Optional parameters for a SegmentedBarcodeSearch
.
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#include <BarcodeSearch.hpp>
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| Options (int max_mismatch_per_segment=0) |
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template<int num_segments_>
struct kaori::SegmentedBarcodeSearch< num_segments_ >::Options
Optional parameters for a SegmentedBarcodeSearch
.
◆ Options()
template<int num_segments_>
- Parameters
-
max_mismatch_per_segment | Maximum number of mismatches per segment. This is used to fill max_mismatches . |
◆ duplicates
template<int num_segments_>
How duplicated barcode sequences should be handled.
◆ max_mismatches
template<int num_segments_>
◆ reverse
template<int num_segments_>
Whether to reverse-complement the barcode sequences before indexing them. Note that, even if reverse = true
, the segment lengths in the SegmentedBarcodeSearch()
constructor and the numbers of mismatches in max_mismatches
should still be ordered according to the forward strand.
The documentation for this struct was generated from the following file: