kaori::SimpleBarcodeSearch::Options Struct Reference

Optional parameters for SimpleBarcodeSearch. More...

#include <BarcodeSearch.hpp>

Public Attributes
int	max_mismatches = 0
bool	reverse = false
DuplicateAction	duplicates = DuplicateAction::ERROR

Detailed Description

Optional parameters for SimpleBarcodeSearch.

Member Data Documentation

duplicates

DuplicateAction kaori::SimpleBarcodeSearch::Options::duplicates = DuplicateAction::ERROR

How duplicated barcode sequences should be handled.

max_mismatches

int kaori::SimpleBarcodeSearch::Options::max_mismatches = 0

Maximum number of mismatches for any search performed by SimpleBarcodeSearch::search.

reverse

bool kaori::SimpleBarcodeSearch::Options::reverse = false

Whether to reverse-complement the barcode sequences before indexing them.

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The documentation for this struct was generated from the following file:

• kaori/BarcodeSearch.hpp