kaori::SimpleSingleMatch< max_size_ >::Options Struct Reference

Optional parameters for SimpleSingleMatch. More...

#include <SimpleSingleMatch.hpp>

Public Attributes
int	max_mismatches = 0
DuplicateAction	duplicates = DuplicateAction::ERROR
SearchStrand	strand = SearchStrand::FORWARD

Detailed Description

template<SeqLength max_size_>
struct kaori::SimpleSingleMatch< max_size_ >::Options

Optional parameters for SimpleSingleMatch.

Member Data Documentation

duplicates

template<SeqLength max_size_>

DuplicateAction kaori::SimpleSingleMatch< max_size_ >::Options::duplicates = DuplicateAction::ERROR

How duplicated barcode sequences should be handled.

max_mismatches

template<SeqLength max_size_>

int kaori::SimpleSingleMatch< max_size_ >::Options::max_mismatches = 0

Maximum number of mismatches for any search performed by SimpleBarcodeSearch::search.

strand

template<SeqLength max_size_>

SearchStrand kaori::SimpleSingleMatch< max_size_ >::Options::strand = SearchStrand::FORWARD

Strand(s) of the read sequence to search.

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The documentation for this struct was generated from the following file:

• kaori/SimpleSingleMatch.hpp