kaori
A C++ library for barcode extraction and matching
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▼Nkaori | Namespace for the kaori barcode-matching library |
▼CAnyMismatches | Search for barcodes with mismatches anywhere |
CResult | Results of search() |
CBarcodePool | Pool of barcode sequences |
CCombinationHash | Hash a combination of barcode indices |
CCombinatorialBarcodesPairedEnd | Handler for paired-end combinatorial barcodes |
▼CCombinatorialBarcodesSingleEnd | Handler for single-end combinatorial barcodes |
COptions | Optional parameters for CombinatorialBarcodeSingleEnd |
▼CDualBarcodesPairedEnd | Handler for dual barcodes |
COptions | Optional parameters for DualBarcodesPairedEnd |
CDualBarcodesPairedEndWithDiagnostics | Handler for dual barcodes with extra diagnostics |
▼CDualBarcodesSingleEnd | Handler for single-end dual barcodes |
COptions | Optional parameters for DualBarcodeSingleEnd |
CDualBarcodesSingleEndWithDiagnostics | Handler for dual barcodes with extra diagnostics |
CFastqReader | Stream reads from a FASTQ file |
CProcessPairedEndDataOptions | Options for process_paired_end_data() |
CProcessSingleEndDataOptions | Options for process_single_end_data() |
▼CRandomBarcodeSingleEnd | Handler for single-end random barcodes |
COptions | Optional parameters for SingleBarcodeSingleEnd |
▼CScanTemplate | Scan a read sequence for the template sequence |
CState | Details on the current match to the read sequence |
▼CSegmentedBarcodeSearch | Search against known barcode sequences with segmented mismatches |
COptions | Optional parameters for a SegmentedBarcodeSearch |
CState | State of the search |
▼CSegmentedMismatches | Search for barcodes with segmented mismatches |
CResult | Result of the segmented search |
▼CSimpleBarcodeSearch | Search against known barcodes |
COptions | Optional parameters for SimpleBarcodeSearch |
CState | State of the search |
▼CSimpleSingleMatch | Search for a template with a single variable region |
COptions | Optional parameters for SimpleSingleMatch |
CState | State of search() |
▼CSingleBarcodePairedEnd | Handler for paired-end single barcodes |
COptions | Optional parameters for SingleBarcodePairedEnd |
▼CSingleBarcodeSingleEnd | Handler for single-end single barcodes |
COptions | Optional parameters for SingleBarcodeSingleEnd |
CTrieAddStatus | Status of barcode sequence addition to the trie |