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kaori
A C++ library for barcode extraction and matching
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| ▼Nkaori | Namespace for the kaori barcode-matching library |
| ▼CAnyMismatches | Search for barcodes with mismatches anywhere |
| CResult | Results of search() |
| CBarcodePool | Pool of barcode sequences |
| CCombinationHash | Hash a combination of barcode indices |
| CCombinatorialBarcodesPairedEnd | Handler for paired-end combinatorial barcodes |
| ▼CCombinatorialBarcodesSingleEnd | Handler for single-end combinatorial barcodes |
| COptions | Optional parameters for CombinatorialBarcodeSingleEnd |
| ▼CDualBarcodesPairedEnd | Handler for dual barcodes |
| COptions | Optional parameters for DualBarcodesPairedEnd |
| CDualBarcodesPairedEndWithDiagnostics | Handler for dual barcodes with extra diagnostics |
| ▼CDualBarcodesSingleEnd | Handler for single-end dual barcodes |
| COptions | Optional parameters for DualBarcodeSingleEnd |
| CDualBarcodesSingleEndWithDiagnostics | Handler for dual barcodes with extra diagnostics |
| CFastqReader | Stream reads from a FASTQ file |
| CProcessPairedEndDataOptions | Options for process_paired_end_data() |
| CProcessSingleEndDataOptions | Options for process_single_end_data() |
| ▼CRandomBarcodeSingleEnd | Handler for single-end random barcodes |
| COptions | Optional parameters for SingleBarcodeSingleEnd |
| ▼CScanTemplate | Scan a read sequence for the template sequence |
| CState | Details on the current match to the read sequence |
| ▼CSegmentedBarcodeSearch | Search against known barcode sequences with segmented mismatches |
| COptions | Optional parameters for a SegmentedBarcodeSearch |
| CState | State of the search |
| ▼CSegmentedMismatches | Search for barcodes with segmented mismatches |
| CResult | Result of the segmented search |
| ▼CSimpleBarcodeSearch | Search against known barcodes |
| COptions | Optional parameters for SimpleBarcodeSearch |
| CState | State of the search |
| ▼CSimpleSingleMatch | Search for a template with a single variable region |
| COptions | Optional parameters for SimpleSingleMatch |
| CState | State of search() |
| ▼CSingleBarcodePairedEnd | Handler for paired-end single barcodes |
| COptions | Optional parameters for SingleBarcodePairedEnd |
| ▼CSingleBarcodeSingleEnd | Handler for single-end single barcodes |
| COptions | Optional parameters for SingleBarcodeSingleEnd |
| CTrieAddStatus | Status of barcode sequence addition to the trie |