kaori
A C++ library for barcode extraction and matching
Loading...
Searching...
No Matches
Class List
Here are the classes, structs, unions and interfaces with brief descriptions:
[detail level 123]
 NkaoriNamespace for the kaori barcode-matching library
 CAnyMismatchesSearch for barcodes with mismatches anywhere
 CResultResults of search()
 CBarcodePoolPool of barcode sequences
 CCombinationHashHash a combination of barcode indices
 CCombinatorialBarcodesPairedEndHandler for paired-end combinatorial barcodes
 CCombinatorialBarcodesSingleEndHandler for single-end combinatorial barcodes
 COptionsOptional parameters for CombinatorialBarcodeSingleEnd
 CDualBarcodesPairedEndHandler for dual barcodes
 COptionsOptional parameters for DualBarcodesPairedEnd
 CDualBarcodesPairedEndWithDiagnosticsHandler for dual barcodes with extra diagnostics
 CDualBarcodesSingleEndHandler for single-end dual barcodes
 COptionsOptional parameters for DualBarcodeSingleEnd
 CDualBarcodesSingleEndWithDiagnosticsHandler for dual barcodes with extra diagnostics
 CFastqReaderStream reads from a FASTQ file
 CProcessPairedEndDataOptionsOptions for process_paired_end_data()
 CProcessSingleEndDataOptionsOptions for process_single_end_data()
 CRandomBarcodeSingleEndHandler for single-end random barcodes
 COptionsOptional parameters for SingleBarcodeSingleEnd
 CScanTemplateScan a read sequence for the template sequence
 CStateDetails on the current match to the read sequence
 CSegmentedBarcodeSearchSearch against known barcode sequences with segmented mismatches
 COptionsOptional parameters for a SegmentedBarcodeSearch
 CStateState of the search
 CSegmentedMismatchesSearch for barcodes with segmented mismatches
 CResultResult of the segmented search
 CSimpleBarcodeSearchSearch against known barcodes
 COptionsOptional parameters for SimpleBarcodeSearch
 CStateState of the search
 CSimpleSingleMatchSearch for a template with a single variable region
 COptionsOptional parameters for SimpleSingleMatch
 CStateState of search()
 CSingleBarcodePairedEndHandler for paired-end single barcodes
 COptionsOptional parameters for SingleBarcodePairedEnd
 CSingleBarcodeSingleEndHandler for single-end single barcodes
 COptionsOptional parameters for SingleBarcodeSingleEnd
 CTrieAddStatusStatus of barcode sequence addition to the trie