This inheritance list is sorted roughly, but not completely, alphabetically:

[detail level 12]

Ckaori::MismatchTrie::AddStatus	Status of the barcode sequence addition
Ckaori::BarcodePool	Pool of barcode sequences for a variable region
Ckaori::CombinatorialBarcodesPairedEnd< max_size >	Handler for paired-end combinatorial barcodes
Ckaori::CombinatorialBarcodesSingleEnd< max_size, num_variable >	Handler for single-end combinatorial barcodes
Ckaori::DualBarcodesPairedEnd< max_size >	Handler for dual barcodes
Ckaori::DualBarcodesPairedEndWithDiagnostics< max_size >	Handler for dual barcodes with extra diagnostics
Ckaori::DualBarcodesSingleEnd< max_size >	Handler for single-end dual barcodes
Ckaori::DualBarcodesSingleEndWithDiagnostics< max_size, num_variable >	Handler for dual barcodes with extra diagnostics
Ckaori::FastqReader	Stream reads from a FASTQ file
▼Ckaori::MismatchTrie	Base class for the mismatch search
Ckaori::AnyMismatches	Search for barcodes with mismatches anywhere
Ckaori::SegmentedMismatches< num_segments >	Search for barcodes with segmented mismatches
Ckaori::CombinatorialBarcodesSingleEnd< max_size, num_variable >::Options	Optional parameters for `CombinatorialBarcodeSingleEnd`
Ckaori::DualBarcodesPairedEnd< max_size >::Options	Optional parameters for `DualBarcodesPairedEnd`
Ckaori::DualBarcodesSingleEnd< max_size >::Options	Optional parameters for `DualBarcodeSingleEnd`
Ckaori::RandomBarcodeSingleEnd< max_size >::Options	Optional parameters for `SingleBarcodeSingleEnd`
Ckaori::SegmentedBarcodeSearch< num_segments >::Options	Optional parameters for a `SegmentedBarcodeSearch`
Ckaori::SimpleBarcodeSearch::Options	Optional parameters for `SimpleBarcodeSearch`
Ckaori::SimpleSingleMatch< max_size >::Options	Optional parameters for `SimpleSingleMatch`
Ckaori::SingleBarcodePairedEnd< max_size >::Options	Optional parameters for `SingleBarcodePairedEnd`
Ckaori::SingleBarcodeSingleEnd< max_size >::Options	Optional parameters for `SingleBarcodeSingleEnd`
Ckaori::RandomBarcodeSingleEnd< max_size >	Handler for single-end random barcodes
Ckaori::SegmentedMismatches< num_segments >::Result	Result of the segmented search
Ckaori::ScanTemplate< max_size >	Scan a read sequence for the template sequence
Ckaori::SegmentedBarcodeSearch< num_segments >	Search for known barcode sequences with segmented mismatches
Ckaori::SegmentedBarcodeSearch< 2 >
Ckaori::SimpleBarcodeSearch	Search for known barcode sequences
Ckaori::SimpleSingleMatch< max_size >	Search for a template with a single variable region
Ckaori::SingleBarcodePairedEnd< max_size >	Handler for paired-end single barcodes
Ckaori::SingleBarcodeSingleEnd< max_size >	Handler for single-end single barcodes
Ckaori::ScanTemplate< max_size >::State	Details on the current match to the read sequence
Ckaori::SegmentedBarcodeSearch< num_segments >::State	State of the search
Ckaori::SimpleBarcodeSearch::State	State of the search
Ckaori::SimpleSingleMatch< max_size >::State	State of the search on a read sequence